Variant report

Variant	rs17102060
Chromosome Location	chr11:104007609-104007610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10502026	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10502027	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10502028	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10502029	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10895572	0.82[CHB][hapmap]
rs10895575	0.81[CHB][hapmap]
rs10895576	0.88[EUR][1000 genomes]
rs10895577	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10895580	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10895584	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs10895585	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs11226158	0.87[CHB][hapmap]
rs11226161	0.81[CHB][hapmap]
rs11226162	0.86[CHB][hapmap]
rs11226163	0.81[CHB][hapmap]
rs11226166	0.81[CHB][hapmap]
rs11226176	0.85[AMR][1000 genomes]
rs11226181	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11226184	0.85[AMR][1000 genomes]
rs11226185	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.88[EUR][1000 genomes]
rs11226186	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11226189	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11226193	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes]
rs11226194	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11226195	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11226196	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11226197	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11226198	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11226199	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11226200	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs11226203	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12224685	0.81[CHB][hapmap]
rs12224797	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12224814	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12224840	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12225994	0.81[CHB][hapmap]
rs12226274	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12226289	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12273661	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12277818	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12279801	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12280073	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12281544	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12284612	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12284794	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12285176	0.90[EUR][1000 genomes]
rs12286104	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12290767	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12295533	0.80[AMR][1000 genomes]
rs1351735	0.91[EUR][1000 genomes]
rs1351736	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1483519	1.00[CEU][hapmap]
rs1501456	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1501457	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1532674	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17093712	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17101978	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17102032	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17102035	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17102040	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17102052	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17102089	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17102103	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1969076	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs361292	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4403779	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4755008	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4755009	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7395216	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7395462	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7396344	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7396388	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7396395	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7396450	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7396472	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs924560	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs924561	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs924562	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	esv1834487	chr11:103959760-104026977	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:103997000-104013400	Weak transcription	Ovary	ovary
2	chr11:104005800-104019400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:104005800-104031000	Weak transcription	Aorta	Aorta
4	chr11:104006200-104013400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:104007000-104008200	Enhancers	HUVEC	blood vessel
6	chr11:104007200-104008000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:104007400-104008000	Enhancers	Fetal Heart	heart

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