Variant report

Variant	rs12224685
Chromosome Location	chr11:103978583-103978584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10502026	0.86[CHB][hapmap]
rs10502027	0.86[CHB][hapmap]
rs10502028	0.86[CHB][hapmap]
rs10502029	0.86[CHB][hapmap]
rs10895572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895573	0.82[ASN][1000 genomes]
rs10895575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10895584	0.86[CHB][hapmap]
rs10895585	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs11226158	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[ASN][1000 genomes]
rs11226161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226164	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226166	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226168	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226169	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11226171	0.82[ASN][1000 genomes]
rs11226173	0.81[ASN][1000 genomes]
rs11226174	0.81[ASN][1000 genomes]
rs11226175	0.80[ASN][1000 genomes]
rs11226176	0.81[EUR][1000 genomes]
rs11226177	0.81[ASN][1000 genomes]
rs11226178	0.81[ASN][1000 genomes]
rs11226180	0.80[ASN][1000 genomes]
rs11226182	0.81[ASN][1000 genomes]
rs11226185	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs11226186	0.86[CHB][hapmap]
rs11226193	0.86[CHB][hapmap]
rs11226195	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs11226196	0.85[CHB][hapmap]
rs11226197	0.86[CHB][hapmap]
rs11226200	0.86[CHB][hapmap]
rs12223758	0.82[ASN][1000 genomes]
rs12224740	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224797	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs12224814	0.86[CHB][hapmap]
rs12225070	1.00[CEU][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12225071	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12225994	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12226274	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs12273661	0.86[CHB][hapmap]
rs12274117	0.81[ASN][1000 genomes]
rs12277818	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs12279801	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs12280073	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs12284612	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs12284794	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs12295533	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13377549	0.81[ASN][1000 genomes]
rs1483519	0.81[CHB][hapmap]
rs1501456	0.85[CHB][hapmap]
rs1501457	0.86[CHB][hapmap]
rs17101978	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs17102060	0.81[CHB][hapmap]
rs361292	0.81[CHB][hapmap];0.85[TSI][hapmap]
rs7396472	0.85[CHB][hapmap]
rs924561	0.86[CHB][hapmap];0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv826068	chr11:103959392-104003956	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1834487	chr11:103959760-104026977	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv519705	chr11:103978540-103981833	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:103971000-103981200	Weak transcription	Ovary	ovary
2	chr11:103976200-103992800	Weak transcription	Aorta	Aorta
3	chr11:103977400-103981200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:103977400-103981200	Weak transcription	Fetal Heart	heart
5	chr11:103977600-103980400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:103978200-103981400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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