Variant report

Variant	rs361292
Chromosome Location	chr11:103996664-103996665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10502026	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10502027	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10502028	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10502029	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10895572	0.81[CHB][hapmap]
rs10895575	0.80[CHB][hapmap];0.85[TSI][hapmap]
rs10895584	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10895585	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11226158	0.85[CHB][hapmap]
rs11226161	0.81[CHB][hapmap];0.85[TSI][hapmap]
rs11226162	0.84[CHB][hapmap]
rs11226163	0.81[CHB][hapmap];0.85[TSI][hapmap]
rs11226166	0.85[CHB][hapmap];0.85[TSI][hapmap]
rs11226176	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11226181	0.83[ASN][1000 genomes]
rs11226184	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226185	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap]
rs11226186	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11226193	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap]
rs11226195	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11226196	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11226197	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11226200	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12224685	0.81[CHB][hapmap];0.85[TSI][hapmap]
rs12224797	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12224814	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12224840	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12225994	0.85[CHB][hapmap];0.85[TSI][hapmap]
rs12226274	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12273661	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap]
rs12277818	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12279801	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap]
rs12280073	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12284612	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs12284794	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs1351736	1.00[CEU][hapmap];0.90[MEX][hapmap]
rs1483519	1.00[CEU][hapmap];0.82[CHB][hapmap];0.87[TSI][hapmap]
rs1501456	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs1501457	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs17101978	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs17102060	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17102089	1.00[CEU][hapmap];0.91[MEX][hapmap]
rs17102103	1.00[CEU][hapmap];0.91[MEX][hapmap]
rs361297	0.85[AFR][1000 genomes]
rs361298	0.85[AFR][1000 genomes]
rs361299	0.85[AFR][1000 genomes]
rs4755008	1.00[CEU][hapmap]
rs4755009	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6591067	0.82[MKK][hapmap]
rs7395462	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7396450	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7396472	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs924561	1.00[CEU][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv826068	chr11:103959392-104003956	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1834487	chr11:103959760-104026977	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv430426	chr11:103978540-104099790	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:103990800-103996800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:103993200-103998400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:103993400-103998400	Weak transcription	Aorta	Aorta
4	chr11:103993400-104005400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:103993600-103996800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:103994600-103996800	Enhancers	Fetal Heart	heart
7	chr11:103995800-103998200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:103996200-103997200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:103996200-103999800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:103996400-103996800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr11:103996400-103997000	Enhancers	Ovary	ovary
12	chr11:103996600-103997000	Enhancers	Left Ventricle	heart
13	chr11:103996600-103997200	Enhancers	A549	lung

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