Variant report

Variant	rs11233811
Chromosome Location	chr11:83635101-83635102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11233775	0.97[GIH][hapmap]
rs11233798	0.97[GIH][hapmap]
rs11233805	1.00[ASW][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11233813	0.81[CEU][hapmap]
rs12271245	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12283751	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12285761	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285920	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285971	0.97[GIH][hapmap]
rs12287742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288941	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12293121	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17486861	0.89[GIH][hapmap]
rs41512247	1.00[ASW][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.87[MKK][hapmap]
rs7111645	0.97[GIH][hapmap]
rs72945801	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72947723	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381595	chr11:83631458-83635697	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11233811	C11orf73	cis	cerebellum	SCAN
rs11233811	CYP1A1	trans	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83623200-83635800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83624600-83636000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83630200-83643200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83633000-83636800	Enhancers	Liver	Liver
7	chr11:83634600-83635400	Enhancers	Brain Hippocampus Middle	brain
8	chr11:83634600-83649400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:83634800-83635200	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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