Variant report

Variant	rs12285920
Chromosome Location	chr11:83634811-83634812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11233805	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11233811	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271245	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12283751	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12285761	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12287742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288941	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12293121	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72945801	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72947723	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381595	chr11:83631458-83635697	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83623200-83635800	Weak transcription	Brain Substantia Nigra	brain
3	chr11:83624600-83636000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83630200-83643200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83633000-83636800	Enhancers	Liver	Liver
7	chr11:83634600-83635400	Enhancers	Brain Hippocampus Middle	brain
8	chr11:83634600-83649400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:83634800-83635200	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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