Variant report

Variant	rs11233805
Chromosome Location	chr11:83623075-83623076
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11233775	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs11233791	0.85[CEU][hapmap]
rs11233798	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs11233799	0.85[CEU][hapmap]
rs11233811	1.00[ASW][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12270625	0.85[CEU][hapmap]
rs12270635	0.85[CEU][hapmap]
rs12271245	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12271288	0.85[CEU][hapmap]
rs12271843	0.84[CEU][hapmap]
rs12273731	0.85[CEU][hapmap]
rs12273942	0.85[CEU][hapmap]
rs12275520	0.85[CEU][hapmap]
rs12276012	0.85[CEU][hapmap]
rs12277425	0.85[CEU][hapmap]
rs12277476	0.85[CEU][hapmap]
rs12277615	0.85[CEU][hapmap]
rs12279274	0.85[CEU][hapmap]
rs12281403	0.85[CEU][hapmap]
rs12281733	0.85[CEU][hapmap]
rs12283751	0.92[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285761	0.97[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12285920	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12285971	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs12286986	0.85[CEU][hapmap]
rs12287742	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12287752	0.85[CEU][hapmap]
rs12288941	0.91[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293121	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12295183	0.85[CEU][hapmap]
rs17486861	0.85[CEU][hapmap];0.92[GIH][hapmap]
rs17558822	0.85[CEU][hapmap]
rs17558872	0.85[CEU][hapmap]
rs41512247	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.87[MKK][hapmap]
rs7105997	0.85[CEU][hapmap]
rs7111282	0.85[CEU][hapmap]
rs7111645	0.85[CEU][hapmap];1.00[GIH][hapmap]
rs7126784	0.85[CEU][hapmap]
rs72945801	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72947723	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9667614	0.85[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11233805	CYP1A1	trans	cerebellum	SCAN
rs11233805	C11orf73	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:83618800-83623600	Enhancers	Liver	Liver
6	chr11:83621000-83629400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:83622400-83623400	Weak transcription	Fetal Kidney	kidney

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