Variant report

Variant	rs12273731
Chromosome Location	chr11:83617269-83617270
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83614752..83617577-chr5:179125435..179127727,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000127022	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11233775	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11233791	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11233798	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11233799	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11233804	1.00[YRI][hapmap]
rs11233805	0.85[CEU][hapmap]
rs11233806	1.00[YRI][hapmap]
rs11233809	0.88[YRI][hapmap]
rs12270625	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12270635	1.00[CEU][hapmap]
rs12271245	0.88[YRI][hapmap]
rs12271288	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12271843	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12273942	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12275520	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12276012	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12277425	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12277476	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12277615	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12279274	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12281403	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12281733	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12283751	0.92[CEU][hapmap]
rs12285761	0.88[YRI][hapmap]
rs12285971	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12286986	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12287752	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12289288	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12295065	1.00[YRI][hapmap]
rs12295183	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17486861	1.00[CEU][hapmap]
rs17558822	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17558872	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs41512247	1.00[CEU][hapmap]
rs4488222	0.88[YRI][hapmap]
rs7105997	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7111282	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7111645	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7126739	1.00[YRI][hapmap]
rs7126784	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7932761	1.00[YRI][hapmap]
rs7932986	1.00[YRI][hapmap]
rs9667614	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2618406	chr11:83617126-83617276	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain

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