Variant report

Variant	rs7932761
Chromosome Location	chr11:83620109-83620110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11233775	1.00[YRI][hapmap]
rs11233791	1.00[YRI][hapmap]
rs11233798	0.88[MKK][hapmap];1.00[YRI][hapmap]
rs11233799	1.00[YRI][hapmap]
rs11233802	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11233803	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11233804	1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11233806	0.94[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11233809	0.81[CEU][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12270625	1.00[YRI][hapmap]
rs12271245	0.88[YRI][hapmap]
rs12271288	1.00[YRI][hapmap]
rs12271843	1.00[YRI][hapmap]
rs12272479	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12273731	1.00[YRI][hapmap]
rs12273942	1.00[YRI][hapmap]
rs12275520	1.00[YRI][hapmap]
rs12276012	1.00[YRI][hapmap]
rs12277024	0.82[EUR][1000 genomes]
rs12277425	1.00[YRI][hapmap]
rs12277476	1.00[YRI][hapmap]
rs12277615	1.00[YRI][hapmap]
rs12279039	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12279163	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12279274	1.00[YRI][hapmap]
rs12281403	1.00[YRI][hapmap]
rs12281733	1.00[YRI][hapmap]
rs12285761	0.88[YRI][hapmap]
rs12285971	0.88[MKK][hapmap];1.00[YRI][hapmap]
rs12286986	1.00[YRI][hapmap]
rs12287752	1.00[YRI][hapmap]
rs12289288	1.00[YRI][hapmap]
rs12295065	1.00[YRI][hapmap]
rs12295183	1.00[YRI][hapmap]
rs12808868	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17558822	1.00[YRI][hapmap]
rs17558872	1.00[YRI][hapmap]
rs34747433	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35396555	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4300411	0.82[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4488222	1.00[ASW][hapmap];0.82[CEU][hapmap];0.97[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.88[YRI][hapmap]
rs4529902	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4564364	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61901827	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61901828	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61901829	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61901830	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66695319	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67497914	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68107455	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7105997	1.00[YRI][hapmap]
rs7111282	1.00[YRI][hapmap]
rs7111645	0.88[MKK][hapmap];1.00[YRI][hapmap]
rs7126739	0.81[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7126784	1.00[YRI][hapmap]
rs72945784	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs790355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7932986	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9667614	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7932761	PRCP	cis	parietal	SCAN
rs7932761	CDC40	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83618800-83623600	Enhancers	Liver	Liver
7	chr11:83620000-83620600	Enhancers	Brain Germinal Matrix	brain

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