Variant report

Variant	rs12272479
Chromosome Location	chr11:83634410-83634411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11233802	0.84[EUR][1000 genomes]
rs11233803	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11233804	1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs11233806	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11233809	0.94[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12271245	0.88[YRI][hapmap]
rs12277024	0.90[EUR][1000 genomes]
rs12279039	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12279163	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12285761	0.88[YRI][hapmap]
rs12808868	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34747433	0.84[EUR][1000 genomes]
rs35396555	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4300411	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4488222	0.94[CEU][hapmap];0.88[YRI][hapmap]
rs4529902	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4564364	0.94[CEU][hapmap];0.96[EUR][1000 genomes]
rs61901827	0.83[EUR][1000 genomes]
rs61901828	0.83[EUR][1000 genomes]
rs61901829	0.83[EUR][1000 genomes]
rs61901830	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66695319	0.83[EUR][1000 genomes]
rs67497914	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68107455	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7126739	0.94[CEU][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72945784	0.83[EUR][1000 genomes]
rs790355	0.84[AMR][1000 genomes]
rs7932761	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7932986	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381595	chr11:83631458-83635697	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83623200-83635800	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83624600-83636000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83630200-83643200	Weak transcription	Brain Angular Gyrus	brain
7	chr11:83633000-83636800	Enhancers	Liver	Liver
8	chr11:83633400-83634600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:83634200-83634600	Enhancers	Brain Inferior Temporal Lobe	brain

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