Variant report

Variant	rs790355
Chromosome Location	chr11:83619864-83619865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11233802	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11233803	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11233804	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11233806	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11233809	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12272479	0.84[AMR][1000 genomes]
rs12279039	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12279163	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12808868	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34747433	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35396555	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4300411	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4529902	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4564364	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61901827	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61901828	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61901829	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61901830	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66695319	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67497914	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs68107455	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7126739	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72945784	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7932761	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7932986	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468765	chr11:83591584-83620940	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv555607	chr11:83591584-83620940	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83608400-83620800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83618800-83623600	Enhancers	Liver	Liver

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