Variant report

Variant	rs11233809
Chromosome Location	chr11:83626516-83626517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11233775	0.88[YRI][hapmap]
rs11233791	0.88[YRI][hapmap]
rs11233798	0.88[YRI][hapmap]
rs11233799	0.88[YRI][hapmap]
rs11233802	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11233803	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11233804	1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11233806	0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12270625	0.88[YRI][hapmap]
rs12271245	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12271288	0.88[YRI][hapmap]
rs12271843	0.87[YRI][hapmap]
rs12272479	0.94[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12273731	0.88[YRI][hapmap]
rs12273942	0.88[YRI][hapmap]
rs12275520	0.88[YRI][hapmap]
rs12276012	0.88[YRI][hapmap]
rs12277024	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12277425	0.88[YRI][hapmap]
rs12277476	0.88[YRI][hapmap]
rs12277615	0.88[YRI][hapmap]
rs12279039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279163	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12279274	0.88[YRI][hapmap]
rs12281403	0.88[YRI][hapmap]
rs12281733	0.88[YRI][hapmap]
rs12285761	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12285971	0.88[YRI][hapmap]
rs12286986	0.87[YRI][hapmap]
rs12287752	0.88[YRI][hapmap]
rs12289288	0.82[YRI][hapmap]
rs12295065	0.88[YRI][hapmap]
rs12295183	0.88[YRI][hapmap]
rs12808868	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17558822	0.88[YRI][hapmap]
rs17558872	0.88[YRI][hapmap]
rs34747433	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35396555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4300411	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4488222	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4529902	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4564364	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61901827	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61901828	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61901829	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61901830	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66695319	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67497914	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68107455	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105997	0.88[YRI][hapmap]
rs7111282	0.87[YRI][hapmap]
rs7111645	0.88[YRI][hapmap]
rs7126739	1.00[CEU][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126784	0.87[YRI][hapmap]
rs72945784	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs790355	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7932761	0.81[CEU][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7932986	0.82[CEU][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9667614	0.88[YRI][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83607200-83628800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83608400-83634600	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83608800-83629400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83618200-83641200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:83621000-83629400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83623200-83635800	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83624600-83636000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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