Variant report

Variant	rs11234372
Chromosome Location	chr11:71350836-71350837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10751132	0.87[EUR][1000 genomes]
rs10898405	0.82[EUR][1000 genomes]
rs10898408	0.84[EUR][1000 genomes]
rs11234367	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11234373	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12361821	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12576748	0.84[EUR][1000 genomes]
rs1940183	0.86[EUR][1000 genomes]
rs2015106	0.85[ASN][1000 genomes]
rs28455706	0.82[EUR][1000 genomes]
rs34322519	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944112	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4945103	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4945109	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4945113	0.87[EUR][1000 genomes]
rs58170305	0.83[ASN][1000 genomes]
rs61890105	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105749	0.89[EUR][1000 genomes]
rs7116448	0.82[EUR][1000 genomes]
rs7116711	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7121709	0.87[EUR][1000 genomes]
rs9666810	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9704791	0.81[ASN][1000 genomes]
rs9734251	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9737430	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1043207	chr11:71293875-71442666	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037088	chr11:71293875-71538991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv3527986	chr11:71298409-71620955	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
6	esv3527987	chr11:71298409-71620955	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv1036258	chr11:71299175-71523551	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv1041027	chr11:71299175-71527896	Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1051879	chr11:71299175-71536860	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1044041	chr11:71299175-71538991	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	esv2761682	chr11:71299175-71619923	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv555403	chr11:71301189-71430470	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv897901	chr11:71316093-71441301	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv897902	chr11:71316093-71468856	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv897903	chr11:71316093-71523766	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
16	nsv897904	chr11:71316093-71615727	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
17	nsv1035306	chr11:71326941-71523551	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
18	nsv972041	chr11:71330518-71615123	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
19	esv1808002	chr11:71330564-71522967	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
20	nsv832205	chr11:71336700-71523817	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	esv3369013	chr11:71338874-71612242	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71350000-71351400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr11:71350200-71351200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:71350400-71351000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:71350400-71351000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:71350400-71351000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
6	chr11:71350400-71351000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr11:71350400-71351000	Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr11:71350400-71351000	Active TSS	Ovary	ovary
9	chr11:71350400-71351000	Active TSS	Right Atrium	heart
10	chr11:71350400-71351000	Bivalent/Poised TSS	Thymus	Thymus
11	chr11:71350400-71351200	Active TSS	H9 Cell Line	embryonic stem cell
12	chr11:71350400-71351200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr11:71350400-71351200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr11:71350400-71351200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:71350400-71351400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr11:71350400-71351400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr11:71350400-71351400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
18	chr11:71350400-71351400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:71350400-71351800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr11:71350400-71351800	Active TSS	Fetal Intestine Large	intestine
21	chr11:71350400-71351800	Active TSS	Fetal Intestine Small	intestine
22	chr11:71350400-71352000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
23	chr11:71350600-71351000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:71350600-71351000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
25	chr11:71350600-71351200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
26	chr11:71350600-71351200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:71350600-71351200	Active TSS	Duodenum Mucosa	Duodenum
28	chr11:71350600-71351400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:71350600-71351800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:71350800-71351000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr11:71350800-71351000	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
32	chr11:71350800-71351000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:71350800-71351000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
34	chr11:71350800-71351000	Bivalent Enhancer	Fetal Stomach	stomach
35	chr11:71350800-71351000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
36	chr11:71350800-71351200	Enhancers	Primary B cells from peripheral blood	blood
37	chr11:71350800-71351200	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:71350800-71351200	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr11:71350800-71351200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr11:71350800-71351200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr11:71350800-71351200	Bivalent Enhancer	Fetal Muscle Leg	muscle
42	chr11:71350800-71351200	Bivalent Enhancer	Placenta	Placenta
43	chr11:71350800-71351200	Active TSS	Right Ventricle	heart
44	chr11:71350800-71351400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:71350800-71351400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:71350800-71351400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr11:71350800-71354400	Weak transcription	Esophagus	oesophagus

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