Variant report

Variant	rs11234546
Chromosome Location	chr11:85812955-85812956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85812308..85815576-chr11:85816844..85820250,5	K562	blood:
2	chr11:85538884..85541590-chr11:85810993..85813631,2	MCF-7	breast:
3	chr11:85810855..85813680-chr11:85847452..85850001,2	K562	blood:
4	chr11:85778602..85782954-chr11:85809019..85814326,4	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10501610	0.87[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap]
rs10792827	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10792828	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10898435	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11234545	0.90[AMR][1000 genomes]
rs11234551	0.88[AMR][1000 genomes]
rs12221866	0.91[JPT][hapmap]
rs17209625	0.82[JPT][hapmap]
rs17209931	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85811400-85813000	Weak transcription	HepG2	liver
2	chr11:85811400-85814800	Weak transcription	K562	blood
3	chr11:85812000-85813200	Enhancers	Hela-S3	cervix
4	chr11:85812000-85813400	Enhancers	NH-A	brain
5	chr11:85812000-85813800	Enhancers	Osteobl	bone
6	chr11:85812200-85813000	Enhancers	Liver	Liver
7	chr11:85812200-85813800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:85812400-85813000	Enhancers	NHEK	skin
9	chr11:85812400-85813200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:85812400-85813400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:85812400-85813400	Enhancers	HMEC	breast
12	chr11:85812400-85813400	Enhancers	HSMM	muscle
13	chr11:85812400-85813600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:85812400-85813600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:85812400-85813600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:85812400-85813600	Enhancers	NHDF-Ad	bronchial
17	chr11:85812400-85813800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:85812600-85813000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:85812600-85813400	Flanking Active TSS	A549	lung
20	chr11:85812600-85813400	Enhancers	NHLF	lung
21	chr11:85812600-85813600	Enhancers	HSMMtube	muscle
22	chr11:85812600-85813800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:85812800-85813600	Enhancers	Pancreatic Islets	Pancreatic Islet

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