Variant report

Variant	rs10792828
Chromosome Location	chr11:85826797-85826798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10792827	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10898435	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10898436	0.83[ASN][1000 genomes]
rs11234545	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11234546	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11234551	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1513389	0.98[ASN][1000 genomes]
rs17209931	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4944558	0.98[ASN][1000 genomes]
rs61907325	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85825800-85827200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:85826200-85826800	Enhancers	GM12878-XiMat	blood
4	chr11:85826200-85829800	Enhancers	K562	blood
5	chr11:85826400-85827000	Enhancers	HMEC	breast
6	chr11:85826400-85827200	Enhancers	NH-A	brain
7	chr11:85826400-85827200	Enhancers	NHEK	skin
8	chr11:85826400-85830400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:85826600-85827000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:85826600-85827200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:85826600-85827200	Enhancers	A549	lung
12	chr11:85826600-85827200	Enhancers	Osteobl	bone
13	chr11:85826600-85827800	Enhancers	Brain Hippocampus Middle	brain
14	chr11:85826600-85828600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:85826600-85828600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:85826600-85829000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:85826600-85829000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:85826600-85829000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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