Variant report

Variant	rs10898436
Chromosome Location	chr11:85841148-85841149
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10501610	0.85[JPT][hapmap]
rs10792828	0.83[ASN][1000 genomes]
rs10792829	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs10898433	1.00[YRI][hapmap]
rs10898437	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898441	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11234532	1.00[YRI][hapmap]
rs11234542	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs11234545	0.94[CHB][hapmap]
rs11234551	0.92[ASN][1000 genomes]
rs11234552	0.93[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234562	0.93[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11234564	0.93[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1513389	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17209931	0.94[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs4944558	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7480193	0.93[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85835800-85845600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:85838200-85846800	Weak transcription	Placenta	Placenta
3	chr11:85838600-85843800	Weak transcription	HepG2	liver
4	chr11:85838800-85845000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:85839000-85845600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:85839600-85841400	Enhancers	K562	blood
7	chr11:85840000-85845600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:85840000-85847200	Weak transcription	Ovary	ovary
9	chr11:85840600-85844200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:85840800-85841200	Weak transcription	Small Intestine	intestine
11	chr11:85840800-85844400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:85841000-85843600	Weak transcription	Fetal Intestine Large	intestine
13	chr11:85841000-85843800	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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