Variant report

Variant	rs11234542
Chromosome Location	chr11:85803238-85803239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10792827	0.87[ASN][1000 genomes]
rs10792829	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs10898433	0.91[GIH][hapmap];0.81[JPT][hapmap];0.83[TSI][hapmap]
rs10898435	0.82[ASN][1000 genomes]
rs10898436	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs11234532	0.81[JPT][hapmap]
rs11234545	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11234552	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11234562	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11234564	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12146464	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17209931	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs17817153	0.81[JPT][hapmap]
rs61907325	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7480193	0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85798400-85803800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:85801400-85804000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85802000-85803400	Enhancers	Osteobl	bone
4	chr11:85802200-85803400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:85802400-85803400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:85802600-85803400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:85802600-85803400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:85802600-85803600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:85802800-85803400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links