Variant report

Variant	rs10792829
Chromosome Location	chr11:85828185-85828186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10792827	0.89[ASN][1000 genomes]
rs10792828	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898433	0.81[GIH][hapmap];0.81[JPT][hapmap]
rs10898435	0.86[ASN][1000 genomes]
rs10898436	0.94[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11234532	0.81[JPT][hapmap]
rs11234542	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs11234545	0.94[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs11234551	0.89[ASN][1000 genomes]
rs11234552	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs11234562	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11234564	1.00[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap]
rs1513389	0.98[ASN][1000 genomes]
rs17209931	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs17817153	0.81[JPT][hapmap]
rs4944558	0.99[ASN][1000 genomes]
rs7480193	0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85826200-85829800	Enhancers	K562	blood
3	chr11:85826400-85830400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:85826600-85828600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:85826600-85828600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:85826600-85829000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:85826600-85829000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:85826600-85829000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:85826800-85828400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr11:85826800-85828400	Flanking Active TSS	GM12878-XiMat	blood
11	chr11:85826800-85828600	Enhancers	Colon Smooth Muscle	Colon
12	chr11:85826800-85830000	Enhancers	Stomach Smooth Muscle	stomach
13	chr11:85827000-85828200	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:85827000-85828200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr11:85827000-85828200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr11:85827000-85828200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:85827000-85828400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr11:85827000-85828600	Enhancers	HSMM	muscle
19	chr11:85827000-85828800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr11:85827000-85828800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:85827000-85829000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:85827200-85828200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr11:85827200-85828200	Flanking Active TSS	NH-A	brain
24	chr11:85827200-85828400	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr11:85827200-85828600	Flanking Active TSS	A549	lung
26	chr11:85827200-85828600	Flanking Active TSS	Osteobl	bone
27	chr11:85827400-85828400	Enhancers	Small Intestine	intestine
28	chr11:85827400-85829600	Enhancers	Fetal Intestine Large	intestine
29	chr11:85827400-85830600	Enhancers	Rectal Smooth Muscle	rectum
30	chr11:85827400-85832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:85827600-85828600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:85827600-85828800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:85827600-85828800	Weak transcription	HepG2	liver
34	chr11:85827600-85829000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:85827600-85829400	Weak transcription	Brain Anterior Caudate	brain
36	chr11:85827800-85829000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:85827800-85829200	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr11:85827800-85829200	Enhancers	HMEC	breast
39	chr11:85827800-85829200	Enhancers	Monocytes-CD14+_RO01746	blood
40	chr11:85828000-85828200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr11:85828000-85828400	Weak transcription	Placenta	Placenta
42	chr11:85828000-85828600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr11:85828000-85829000	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr11:85828000-85829000	Enhancers	Muscle Satellite Cultured Cells	--
45	chr11:85828000-85829200	Enhancers	NHEK	skin
46	chr11:85828000-85829600	Enhancers	Fetal Intestine Small	intestine
47	chr11:85828000-85834200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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