Variant report

Variant	rs4944558
Chromosome Location	chr11:85829867-85829868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85827653..85830029-chr11:85842265..85844324,3	K562	blood:
2	chr11:85827002..85832130-chr11:85832527..85838500,7	MCF-7	breast:
3	chr11:85828354..85830136-chr11:85831777..85833515,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10792827	0.89[ASN][1000 genomes]
rs10792828	0.98[ASN][1000 genomes]
rs10792829	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs10898433	0.81[JPT][hapmap]
rs10898435	0.85[ASN][1000 genomes]
rs10898436	0.93[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898437	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10898441	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11234532	0.81[JPT][hapmap]
rs11234542	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11234545	0.94[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs11234551	0.90[ASN][1000 genomes]
rs11234552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11234562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11234564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1513389	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17209931	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs17817153	0.81[JPT][hapmap]
rs7480193	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85826400-85830400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:85826800-85830000	Enhancers	Stomach Smooth Muscle	stomach
4	chr11:85827400-85830600	Enhancers	Rectal Smooth Muscle	rectum
5	chr11:85827400-85832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:85828000-85834200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:85828200-85830400	Enhancers	NH-A	brain
8	chr11:85828600-85830200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:85828600-85832200	Weak transcription	Placenta	Placenta
10	chr11:85829000-85830200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:85829000-85830600	Enhancers	Colon Smooth Muscle	Colon
12	chr11:85829200-85831600	Enhancers	Fetal Kidney	kidney
13	chr11:85829200-85832400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:85829400-85830600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr11:85829400-85834200	Weak transcription	A549	lung
16	chr11:85829600-85830200	Enhancers	Fetal Lung	lung
17	chr11:85829600-85830200	Weak transcription	Small Intestine	intestine
18	chr11:85829600-85830400	Weak transcription	Brain Anterior Caudate	brain
19	chr11:85829600-85831000	Weak transcription	Fetal Intestine Large	intestine
20	chr11:85829600-85831800	Weak transcription	Fetal Intestine Small	intestine
21	chr11:85829600-85831800	Weak transcription	HepG2	liver
22	chr11:85829800-85830000	Enhancers	Liver	Liver
23	chr11:85829800-85834000	Weak transcription	K562	blood

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