Variant report

Variant	rs11234545
Chromosome Location	chr11:85810463-85810464
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10501608	1.00[YRI][hapmap]
rs10792827	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10792828	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10792829	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs10898433	1.00[YRI][hapmap]
rs10898435	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10898436	0.94[CHB][hapmap]
rs11234532	1.00[YRI][hapmap]
rs11234542	0.89[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs11234546	0.90[AMR][1000 genomes]
rs11234552	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs11234562	0.94[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs11234564	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs1513389	0.87[ASN][1000 genomes]
rs17209931	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944558	0.85[ASN][1000 genomes]
rs61907325	0.83[AFR][1000 genomes]
rs7480193	0.89[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85803400-85810800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:85804400-85811000	Weak transcription	Osteobl	bone
3	chr11:85809600-85811000	Weak transcription	K562	blood
4	chr11:85810400-85811200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:85810400-85811200	Enhancers	Liver	Liver
6	chr11:85810400-85811400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:85810400-85811400	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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