Variant report

Variant	rs11234532
Chromosome Location	chr11:85772636-85772637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85764603..85768167-chr11:85770443..85773239,4	K562	blood:
2	chr11:85767944..85769577-chr11:85771277..85773759,2	MCF-7	breast:
3	chr11:85770427..85773942-chr11:85777153..85782179,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10501604	0.83[MEX][hapmap]
rs10501608	1.00[ASW][hapmap];0.84[MEX][hapmap]
rs10792829	0.81[JPT][hapmap]
rs10898433	1.00[ASW][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10898436	1.00[YRI][hapmap]
rs11234542	0.81[JPT][hapmap]
rs11234545	1.00[YRI][hapmap]
rs11234552	0.81[JPT][hapmap]
rs11234562	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11234564	0.81[JPT][hapmap]
rs12146464	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17209931	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs17817153	1.00[CEU][hapmap];0.88[JPT][hapmap];0.88[EUR][1000 genomes]
rs61907325	0.92[AFR][1000 genomes]
rs7480193	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv898054	chr11:85683554-85772636	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv468774	chr11:85688209-85775059	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555644	chr11:85688209-85775059	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1829985	chr11:85740319-85789350	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85752800-85776400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:85756000-85776000	Weak transcription	Esophagus	oesophagus
3	chr11:85756600-85775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85758600-85774400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:85759000-85773600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:85759400-85773800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:85759400-85774400	Weak transcription	NHEK	skin
8	chr11:85760200-85773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:85762200-85773800	Weak transcription	NHDF-Ad	bronchial
10	chr11:85762400-85773000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:85763200-85772800	Weak transcription	NHLF	lung
12	chr11:85764000-85775000	Weak transcription	Fetal Brain Female	brain
13	chr11:85764200-85774800	Weak transcription	HMEC	breast
14	chr11:85764200-85775200	Weak transcription	Fetal Intestine Small	intestine
15	chr11:85764400-85777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:85765000-85773000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr11:85765000-85773200	Weak transcription	Lung	lung
18	chr11:85765600-85773200	Weak transcription	Spleen	Spleen
19	chr11:85765600-85773800	Weak transcription	Dnd41	blood
20	chr11:85765600-85775400	Weak transcription	Placenta	Placenta
21	chr11:85765600-85777800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:85765800-85775200	Weak transcription	Brain Germinal Matrix	brain
23	chr11:85766000-85773800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:85766000-85773800	Weak transcription	HSMM	muscle
25	chr11:85766000-85775400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:85767000-85773800	Weak transcription	Thymus	Thymus
27	chr11:85767800-85773800	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr11:85768000-85774000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:85768800-85772800	Enhancers	Fetal Heart	heart
30	chr11:85768800-85773000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:85768800-85773000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr11:85768800-85773200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:85768800-85773400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr11:85768800-85776600	Enhancers	Liver	Liver
35	chr11:85769000-85772800	Enhancers	Brain Anterior Caudate	brain
36	chr11:85769200-85773600	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:85769400-85772800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:85769400-85773000	Enhancers	Primary T cells from cord blood	blood
39	chr11:85769400-85776400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr11:85769400-85777200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr11:85769600-85773400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr11:85770200-85772800	Enhancers	Brain Substantia Nigra	brain
43	chr11:85770200-85773000	Enhancers	Right Ventricle	heart
44	chr11:85770200-85773800	Weak transcription	A549	lung
45	chr11:85770200-85774200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr11:85770400-85773200	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr11:85770400-85773200	Enhancers	Primary T cells fromperipheralblood	blood
48	chr11:85770400-85773400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:85770400-85776600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:85770600-85772800	Enhancers	HUES6 Cell Line	embryonic stem cell

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