Variant report

Variant	rs61907325
Chromosome Location	chr11:85802779-85802780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZMIZ1	chr11:85802736-85802954	K562	blood:	n/a	n/a
2	JUND	chr11:85802737-85802840	K562	blood:	n/a	n/a
3	YY1	chr11:85802732-85802934	K562	blood:	n/a	n/a
4	MYC	chr11:85802746-85802946	MCF10A-Er-Src	breast:	n/a	n/a
5	NFYB	chr11:85802698-85802851	GM12878	blood:	n/a	n/a
6	MAX	chr11:85802618-85802936	K562	blood:	n/a	n/a
7	TBL1XR1	chr11:85802729-85802824	K562	blood:	n/a	n/a
8	MYC	chr11:85802705-85802905	MCF10A-Er-Src	breast:	n/a	n/a
9	CEBPB	chr11:85802662-85803009	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85796338..85798988-chr11:85799126..85803247,4	K562	blood:

Variant related genes	Relation type
ENSG00000238666	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10792827	0.83[AFR][1000 genomes]
rs10792828	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10898433	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11234532	0.92[AFR][1000 genomes]
rs11234542	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11234545	0.83[AFR][1000 genomes]
rs11234551	0.80[AMR][1000 genomes]
rs12146464	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85798400-85803800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:85799600-85802800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:85801400-85804000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85802000-85803400	Enhancers	Osteobl	bone
5	chr11:85802200-85803400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:85802400-85803200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:85802400-85803200	Enhancers	NH-A	brain
8	chr11:85802400-85803200	Enhancers	NHLF	lung
9	chr11:85802400-85803400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:85802600-85802800	Enhancers	Stomach Smooth Muscle	stomach
11	chr11:85802600-85803000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:85802600-85803000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:85802600-85803000	Enhancers	HepG2	liver
14	chr11:85802600-85803000	Enhancers	HSMMtube	muscle
15	chr11:85802600-85803200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:85802600-85803200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:85802600-85803200	Enhancers	Adipose Nuclei	Adipose
18	chr11:85802600-85803200	Enhancers	Liver	Liver
19	chr11:85802600-85803200	Enhancers	Right Atrium	heart
20	chr11:85802600-85803200	Enhancers	HMEC	breast
21	chr11:85802600-85803200	Enhancers	HSMM	muscle
22	chr11:85802600-85803200	Enhancers	K562	blood
23	chr11:85802600-85803200	Enhancers	NHDF-Ad	bronchial
24	chr11:85802600-85803200	Enhancers	NHEK	skin
25	chr11:85802600-85803400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:85802600-85803400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:85802600-85803600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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