Variant report

Variant	rs17209931
Chromosome Location	chr11:85810826-85810827
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10501608	1.00[ASW][hapmap]
rs10792827	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10792828	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10792829	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10898433	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs10898435	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10898436	0.94[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11234532	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11234542	0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11234545	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234546	0.90[AMR][1000 genomes]
rs11234552	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11234562	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs11234564	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs1513389	0.87[ASN][1000 genomes]
rs17817153	0.83[JPT][hapmap]
rs4944558	0.85[ASN][1000 genomes]
rs7480193	0.95[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85804400-85811000	Weak transcription	Osteobl	bone
2	chr11:85809600-85811000	Weak transcription	K562	blood
3	chr11:85810400-85811200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:85810400-85811200	Enhancers	Liver	Liver
5	chr11:85810400-85811400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:85810400-85811400	Enhancers	NHEK	skin
7	chr11:85810800-85811000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:85810800-85811200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:85810800-85811200	Enhancers	NHLF	lung
10	chr11:85810800-85811400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:85810800-85811400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:85810800-85811400	Enhancers	HepG2	liver
13	chr11:85810800-85811400	Enhancers	NHDF-Ad	bronchial
14	chr11:85810800-85811600	Enhancers	A549	lung
15	chr11:85810800-85811600	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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