Variant report

Variant	rs11235697
Chromosome Location	chr11:72966697-72966698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10898912	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898913	0.83[ASN][1000 genomes]
rs10898914	0.83[ASN][1000 genomes]
rs11235692	1.00[ASN][1000 genomes]
rs11235693	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235696	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235701	0.83[ASN][1000 genomes]
rs11826151	0.89[AFR][1000 genomes]
rs12285916	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362985	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55825221	1.00[ASN][1000 genomes]
rs56317976	1.00[ASN][1000 genomes]
rs59862327	1.00[ASN][1000 genomes]
rs7114877	0.83[ASN][1000 genomes]
rs7127659	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925649	0.86[EUR][1000 genomes]
rs9988805	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv975393	chr11:72954333-72969696	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72954200-72968600	Weak transcription	Left Ventricle	heart
2	chr11:72954400-72967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:72956600-72968600	Weak transcription	Lung	lung
4	chr11:72960800-72975400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:72961200-72968400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:72962000-72966800	Weak transcription	Placenta	Placenta
7	chr11:72964000-72968000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:72964200-72966800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:72964200-72968000	Weak transcription	A549	lung
10	chr11:72964200-72968200	Weak transcription	Fetal Heart	heart
11	chr11:72965600-72968400	Weak transcription	HUVEC	blood vessel
12	chr11:72966600-72968000	Weak transcription	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links