Variant report

Variant	rs55825221
Chromosome Location	chr11:72968937-72968938
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72968010..72971100-chr11:72972272..72977350,4	MCF-7	breast:
2	chr11:72953671..72955860-chr11:72968822..72970580,2	K562	blood:
3	chr11:72968142..72972004-chr11:72979481..72982441,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10898912	1.00[ASN][1000 genomes]
rs10898913	0.83[ASN][1000 genomes]
rs10898914	0.83[ASN][1000 genomes]
rs11235692	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235693	1.00[ASN][1000 genomes]
rs11235694	0.85[EUR][1000 genomes]
rs11235696	1.00[ASN][1000 genomes]
rs11235697	1.00[ASN][1000 genomes]
rs11235699	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11235700	0.90[EUR][1000 genomes]
rs11235701	0.83[ASN][1000 genomes]
rs12285916	1.00[ASN][1000 genomes]
rs56317976	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59862327	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114877	0.83[ASN][1000 genomes]
rs7127659	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv975393	chr11:72954333-72969696	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72960800-72975400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:72966800-72970000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:72966800-72971400	Enhancers	Placenta	Placenta
4	chr11:72967000-72970800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:72967200-72970200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:72967800-72969600	Enhancers	HMEC	breast
7	chr11:72967800-72970000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:72967800-72971400	Enhancers	Spleen	Spleen
9	chr11:72968000-72969600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:72968000-72969600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:72968000-72969600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:72968000-72969600	Enhancers	Fetal Kidney	kidney
13	chr11:72968000-72971400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr11:72968200-72969200	Enhancers	Fetal Heart	heart
15	chr11:72968400-72969200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:72968400-72969200	Enhancers	Stomach Smooth Muscle	stomach
17	chr11:72968400-72969200	Bivalent Enhancer	HepG2	liver
18	chr11:72968400-72969400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:72968400-72969400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:72968400-72969400	Enhancers	HUVEC	blood vessel
21	chr11:72968400-72969600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:72968400-72969600	Enhancers	Brain Substantia Nigra	brain
23	chr11:72968400-72969600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr11:72968400-72969800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:72968400-72969800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:72968400-72969800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:72968400-72969800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr11:72968400-72969800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:72968400-72969800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:72968400-72970000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:72968400-72970000	Enhancers	Fetal Muscle Leg	muscle
32	chr11:72968400-72970000	Enhancers	Hela-S3	cervix
33	chr11:72968600-72969000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:72968600-72969000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:72968600-72969000	Enhancers	Psoas Muscle	Psoas
36	chr11:72968600-72969000	Flanking Active TSS	A549	lung
37	chr11:72968600-72969000	Flanking Active TSS	NHEK	skin
38	chr11:72968600-72969000	Flanking Active TSS	NHLF	lung
39	chr11:72968600-72969200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:72968600-72969200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:72968600-72969200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr11:72968600-72969200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:72968600-72969200	Enhancers	Pancreas	Pancrea
44	chr11:72968600-72969200	Flanking Active TSS	Osteobl	bone
45	chr11:72968600-72969400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:72968600-72969400	Enhancers	Aorta	Aorta
47	chr11:72968600-72969400	Flanking Active TSS	NHDF-Ad	bronchial
48	chr11:72968600-72969600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:72968600-72969600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:72968600-72969600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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