Variant report

Variant	rs10898913
Chromosome Location	chr11:72971437-72971438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:72971300-72971450	HA-sp	spinal cord:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:72970009..72972041-chr11:72975235..72977054,2	MCF-7	breast:
2	chr11:72969464..72972035-chr11:72974532..72976271,2	K562	blood:
3	chr11:72968142..72972004-chr11:72979481..72982441,3	MCF-7	breast:
4	chr11:72969879..72972349-chr11:72976555..72979179,2	K562	blood:

Variant related genes	Relation type
P2RY6	TF binding region
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10898912	0.83[ASN][1000 genomes]
rs10898914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11235692	0.83[ASN][1000 genomes]
rs11235693	0.83[ASN][1000 genomes]
rs11235696	0.83[ASN][1000 genomes]
rs11235697	0.83[ASN][1000 genomes]
rs11235699	1.00[JPT][hapmap]
rs11235701	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235705	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235706	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11235708	0.95[ASN][1000 genomes]
rs11235709	0.95[ASN][1000 genomes]
rs11235710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11235711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11235712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11235713	0.95[ASN][1000 genomes]
rs12276627	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12285916	0.83[ASN][1000 genomes]
rs12363628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12787775	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12790447	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12790863	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12794405	0.95[ASN][1000 genomes]
rs12801084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12808111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1894075	0.95[ASN][1000 genomes]
rs28513476	0.95[ASN][1000 genomes]
rs34023835	0.95[ASN][1000 genomes]
rs34385073	0.95[ASN][1000 genomes]
rs35455220	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35963948	0.95[ASN][1000 genomes]
rs4432047	0.95[ASN][1000 genomes]
rs55825221	0.83[ASN][1000 genomes]
rs56317976	0.83[ASN][1000 genomes]
rs59862327	0.83[ASN][1000 genomes]
rs6592517	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67897720	0.95[ASN][1000 genomes]
rs7103650	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7106903	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7114877	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116594	0.95[ASN][1000 genomes]
rs7123808	0.95[ASN][1000 genomes]
rs7127013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7127179	0.95[ASN][1000 genomes]
rs7127659	0.83[ASN][1000 genomes]
rs7127705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7127940	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925481	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7925649	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7930891	0.95[ASN][1000 genomes]
rs7942649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs882904	0.95[ASN][1000 genomes]
rs9988805	0.94[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72960800-72975400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:72969400-72974200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:72969600-72974400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:72969600-72975400	Weak transcription	Psoas Muscle	Psoas
5	chr11:72969600-72975400	Weak transcription	HMEC	breast
6	chr11:72969800-72973800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:72969800-72974000	Weak transcription	Lung	lung
8	chr11:72969800-72974200	Weak transcription	NH-A	brain
9	chr11:72969800-72975400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:72970000-72973800	Weak transcription	A549	lung
11	chr11:72970000-72974200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:72970000-72975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:72970000-72976000	Weak transcription	HSMMtube	muscle
14	chr11:72970200-72972400	Weak transcription	NHLF	lung
15	chr11:72970200-72973200	Weak transcription	Osteobl	bone
16	chr11:72970200-72973400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:72970200-72973800	Weak transcription	NHDF-Ad	bronchial
18	chr11:72970800-72975400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:72971400-72974000	Weak transcription	Placenta	Placenta
20	chr11:72971400-72974200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:72971400-72975600	Weak transcription	Spleen	Spleen

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