Variant report

Variant	rs35963948
Chromosome Location	chr11:72991186-72991187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72986629..72988131-chr11:72989810..72992579,2	MCF-7	breast:
2	chr11:72850169..72853081-chr11:72989543..72991443,2	MCF-7	breast:
3	chr11:72990557..72993026-chr11:72999122..73001314,2	MCF-7	breast:
4	chr11:72989464..72991794-chr11:72995761..72997538,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137478	Chromatin interaction
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10898913	0.95[ASN][1000 genomes]
rs10898914	0.95[ASN][1000 genomes]
rs10898915	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235701	0.95[ASN][1000 genomes]
rs11235703	1.00[ASN][1000 genomes]
rs11235705	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11235706	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11235707	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235708	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235709	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235710	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235711	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235712	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235713	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276627	1.00[ASN][1000 genomes]
rs12363628	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790447	1.00[ASN][1000 genomes]
rs12790863	1.00[ASN][1000 genomes]
rs12794405	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808111	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894075	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513476	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023835	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34385073	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35455220	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4432047	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592517	1.00[ASN][1000 genomes]
rs67897720	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7103650	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106903	1.00[ASN][1000 genomes]
rs7114877	0.95[ASN][1000 genomes]
rs7116594	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123808	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127013	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127179	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127705	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127940	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7930891	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942649	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882904	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72977200-72991600	Weak transcription	Osteobl	bone
2	chr11:72980400-72998400	Weak transcription	Right Atrium	heart
3	chr11:72983400-72994600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:72983600-72994200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:72984600-73000000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:72985000-72992000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:72986200-72991600	Weak transcription	GM12878-XiMat	blood
8	chr11:72986200-72991800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr11:72986200-72999800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:72986400-72991600	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:72986800-72991400	Weak transcription	Spleen	Spleen
12	chr11:72986800-72991600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:72986800-72992200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:72986800-72992400	Weak transcription	Esophagus	oesophagus
15	chr11:72987000-72992400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr11:72988000-72991200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:72989000-72991600	Weak transcription	A549	lung
18	chr11:72990600-72991200	Genic enhancers	Fetal Intestine Large	intestine
19	chr11:72990600-72995600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:72990800-72991400	Enhancers	Adipose Nuclei	Adipose
21	chr11:72990800-72995600	Genic enhancers	Fetal Intestine Small	intestine
22	chr11:72991000-72991200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:72991000-72993600	Genic enhancers	Placenta	Placenta
24	chr11:72991000-72995600	Enhancers	Primary monocytes fromperipheralblood	blood

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