Variant report

Variant	rs7106903
Chromosome Location	chr11:72982110-72982111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr11:72982078-72985057	SK-N-SH	brain:	n/a	n/a
2	EP300	chr11:72979726-72985647	SK-N-SH	brain:	n/a	chr11:72985619-72985633 chr11:72984138-72984152 chr11:72981442-72981455 chr11:72984140-72984154 chr11:72984139-72984153 chr11:72981929-72981945
3	GATA2	chr11:72982000-72983436	SH-SY5Y	brain:	n/a	chr11:72982906-72982915 chr11:72982897-72982914

No.	Distal block	Cell Line	Cell type
1	chr11:72980434..72984433-chr11:73015744..73020345,4	MCF-7	breast:
2	chr11:72974009..72977358-chr11:72978806..72983362,4	MCF-7	breast:
3	chr11:72980905..72982419-chr17:39681164..39684065,2	MCF-7	breast:
4	chr11:72979299..72983458-chr11:73018365..73020880,3	MCF-7	breast:
5	chr11:72981413..72982163-chrX:71428735..71429466,2	HCT-116	colon:
6	chr11:72976176..72978838-chr11:72980809..72982762,2	K562	blood:
7	chr11:72973762..72975589-chr11:72980219..72982550,2	K562	blood:

Variant related genes	Relation type
P2RY6	TF binding region
ENSG00000110237	Chromatin interaction
ENSG00000257038	Chromatin interaction
ENSG00000171345	Chromatin interaction
ENSG00000171631	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10898913	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898914	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235699	1.00[JPT][hapmap]
rs11235701	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235705	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235707	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235708	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235709	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235710	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235711	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235712	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235713	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363628	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12790447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794405	1.00[ASN][1000 genomes]
rs12801084	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12808111	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1894075	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513476	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023835	1.00[ASN][1000 genomes]
rs34385073	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35455220	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35963948	1.00[ASN][1000 genomes]
rs4432047	1.00[ASN][1000 genomes]
rs6592517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67897720	1.00[ASN][1000 genomes]
rs7103650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114877	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116594	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123808	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127013	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7127179	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127705	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7127940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925481	0.82[EUR][1000 genomes]
rs7925649	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs7930891	1.00[ASN][1000 genomes]
rs7942649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs882904	1.00[ASN][1000 genomes]
rs9988805	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72976400-72984800	Enhancers	Placenta Amnion	Placenta Amnion
2	chr11:72977000-72983200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:72977200-72991600	Weak transcription	Osteobl	bone
4	chr11:72978000-72982800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:72978000-72986000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:72978800-72982800	Weak transcription	HSMMtube	muscle
7	chr11:72979000-72984200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:72979800-72982200	Enhancers	GM12878-XiMat	blood
9	chr11:72979800-72984000	Enhancers	Spleen	Spleen
10	chr11:72980000-72983600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:72980400-72982200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr11:72980400-72983400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr11:72980400-72983600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:72980400-72987200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:72980400-72998400	Weak transcription	Right Atrium	heart
16	chr11:72980600-72982200	Enhancers	H9 Cell Line	embryonic stem cell
17	chr11:72980600-72982200	Bivalent Enhancer	HepG2	liver
18	chr11:72980600-72982400	Enhancers	Colonic Mucosa	Colon
19	chr11:72980600-72983000	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:72980600-72984000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:72980800-72982200	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr11:72980800-72982600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr11:72981200-72982200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr11:72981200-72982800	Enhancers	A549	lung
25	chr11:72981200-72985600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:72981200-72985600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:72981200-72991000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:72981400-72982800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:72981400-72983000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:72981400-72983000	Weak transcription	Esophagus	oesophagus
31	chr11:72981400-72983400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:72981600-72982800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:72981600-72982800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:72981600-72982800	Weak transcription	HMEC	breast
35	chr11:72981600-72982800	Weak transcription	NHEK	skin
36	chr11:72981600-72983000	Weak transcription	Left Ventricle	heart
37	chr11:72981600-72983200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:72981600-72984000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:72981600-72984400	Weak transcription	Lung	lung
40	chr11:72981800-72982600	Flanking Active TSS	Fetal Intestine Small	intestine
41	chr11:72981800-72982800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:72981800-72983000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:72981800-72983200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:72981800-72983400	Weak transcription	Fetal Muscle Leg	muscle
45	chr11:72981800-72984000	Enhancers	Fetal Heart	heart
46	chr11:72982000-72982200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr11:72982000-72982200	Enhancers	Fetal Intestine Large	intestine
48	chr11:72982000-72982600	Flanking Active TSS	Placenta	Placenta
49	chr11:72982000-72982800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:72982000-72984400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links