Variant report

Variant	rs12787775
Chromosome Location	chr11:72975217-72975218
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10898913	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898914	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10898915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235699	1.00[JPT][hapmap]
rs11235701	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11235703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235705	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235707	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235708	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235709	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235710	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235711	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235712	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11235713	1.00[ASN][1000 genomes]
rs12276627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12363628	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12790447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794405	1.00[ASN][1000 genomes]
rs12801084	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12808111	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1894075	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513476	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023835	1.00[ASN][1000 genomes]
rs34385073	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35455220	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35963948	1.00[ASN][1000 genomes]
rs4432047	1.00[ASN][1000 genomes]
rs6592517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67897720	1.00[ASN][1000 genomes]
rs7103650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114877	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7116594	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123808	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127013	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7127179	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127705	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7127940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925481	0.84[EUR][1000 genomes]
rs7925649	1.00[JPT][hapmap]
rs7930891	1.00[ASN][1000 genomes]
rs7942649	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs882904	1.00[ASN][1000 genomes]
rs9988805	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72960800-72975400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:72969600-72975400	Weak transcription	Psoas Muscle	Psoas
3	chr11:72969600-72975400	Weak transcription	HMEC	breast
4	chr11:72969800-72975400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:72970000-72975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:72970000-72976000	Weak transcription	HSMMtube	muscle
7	chr11:72970800-72975400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:72971400-72975600	Weak transcription	Spleen	Spleen
9	chr11:72974000-72975400	Enhancers	Placenta	Placenta
10	chr11:72974200-72975400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:72974200-72975400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:72974400-72975400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:72974800-72976000	Weak transcription	A549	lung
14	chr11:72975200-72975400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:72975200-72975400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:72975200-72975400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:72975200-72975400	Enhancers	Fetal Intestine Small	intestine
18	chr11:72975200-72975400	Bivalent Enhancer	Fetal Stomach	stomach
19	chr11:72975200-72975400	Flanking Active TSS	Osteobl	bone
20	chr11:72975200-72975600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:72975200-72975800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr11:72975200-72975800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
23	chr11:72975200-72975800	Enhancers	Lung	lung
24	chr11:72975200-72976200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
25	chr11:72975200-72977400	Bivalent Enhancer	Fetal Muscle Leg	muscle

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