Variant report

Variant	rs12285916
Chromosome Location	chr11:72963632-72963633
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10898912	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898913	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10898914	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10898915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11235692	1.00[ASN][1000 genomes]
rs11235693	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235697	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11235699	1.00[JPT][hapmap]
rs11235701	0.83[ASN][1000 genomes]
rs11235703	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11235706	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11235707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11235710	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11235711	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11235712	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11826151	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12276627	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12362985	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12363628	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12787775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12790447	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12790863	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12801084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12808111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55825221	1.00[ASN][1000 genomes]
rs56317976	1.00[ASN][1000 genomes]
rs59862327	1.00[ASN][1000 genomes]
rs6592517	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7103650	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7106903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7114877	0.83[ASN][1000 genomes]
rs7127013	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7127659	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127705	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7127940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7925649	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7942649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9988805	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	nsv1038032	chr11:72925347-72966442	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv975393	chr11:72954333-72969696	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3324251	chr11:72961129-72963877	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3427911	chr11:72961429-72964227	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3354884	chr11:72961704-72964102	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72954200-72964000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:72954200-72968600	Weak transcription	Left Ventricle	heart
3	chr11:72954400-72967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:72956200-72963800	Weak transcription	Fetal Heart	heart
5	chr11:72956600-72968600	Weak transcription	Lung	lung
6	chr11:72960800-72975400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:72961200-72968400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:72962000-72966800	Weak transcription	Placenta	Placenta
9	chr11:72963600-72963800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:72963600-72964000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:72963600-72964200	Enhancers	A549	lung

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