Variant report

Variant	rs11236788
Chromosome Location	chr11:76291625-76291626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10160346	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10219259	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236793	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236794	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273530	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274380	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276178	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280432	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281497	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286370	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286377	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28559296	0.95[ASN][1000 genomes]
rs56785389	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57046912	0.94[EUR][1000 genomes]
rs57873830	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58019654	0.94[EUR][1000 genomes]
rs71469525	0.84[EUR][1000 genomes]
rs73495480	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518717	chr11:76288937-76310976	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76285800-76292200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:76289800-76291800	Enhancers	Ovary	ovary
3	chr11:76290000-76291800	Enhancers	Spleen	Spleen
4	chr11:76291000-76291800	Enhancers	HUVEC	blood vessel
5	chr11:76291200-76299200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:76291600-76294200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:76291600-76299800	Weak transcription	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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