Variant report

Variant	rs10219259
Chromosome Location	chr11:76299219-76299220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:76299002-76300424	HUVEC	blood vessel:	n/a	n/a
2	CEBPB	chr11:76298727-76299240	IMR90	lung:	n/a	n/a
3	FOS	chr11:76298919-76299223	MCF10A-Er-Src	breast:	n/a	n/a
4	FOSL2	chr11:76298798-76299309	A549	lung:	n/a	n/a
5	FOS	chr11:76298897-76299228	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr11:76298923-76299224	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000254755	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10160346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501423	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236788	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236794	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12274380	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276178	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281497	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12286377	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28559296	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56785389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57046912	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57873830	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58019654	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61324790	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71469525	0.89[EUR][1000 genomes]
rs73495480	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518717	chr11:76288937-76310976	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76291600-76299800	Weak transcription	Lung	lung
2	chr11:76294800-76299600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:76298200-76299400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:76298200-76300800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:76298200-76303200	Enhancers	Placenta	Placenta
6	chr11:76298200-76305000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr11:76298400-76299600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr11:76298400-76301400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:76298600-76300000	Enhancers	Rectal Smooth Muscle	rectum
10	chr11:76298600-76300200	Enhancers	Primary B cells from cord blood	blood
11	chr11:76298600-76300200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:76298600-76300400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr11:76298600-76301000	Enhancers	HUVEC	blood vessel
14	chr11:76298800-76299600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:76298800-76300200	Enhancers	Primary B cells from peripheral blood	blood
16	chr11:76298800-76300200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:76298800-76300200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:76298800-76300400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr11:76298800-76300800	Enhancers	Primary hematopoietic stem cells	blood
20	chr11:76299200-76299600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:76299200-76299600	Enhancers	Osteobl	bone
22	chr11:76299200-76299800	Enhancers	Duodenum Mucosa	Duodenum
23	chr11:76299200-76299800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr11:76299200-76300000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr11:76299200-76300000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr11:76299200-76300000	Enhancers	NHLF	lung
27	chr11:76299200-76300200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:76299200-76300200	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:76299200-76300200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:76299200-76300400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:76299200-76300400	Enhancers	Colon Smooth Muscle	Colon
32	chr11:76299200-76300400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr11:76299200-76300600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr11:76299200-76300800	Enhancers	Adipose Nuclei	Adipose
35	chr11:76299200-76301400	Enhancers	Fetal Muscle Leg	muscle
36	chr11:76299200-76301800	Enhancers	Fetal Stomach	stomach
37	chr11:76299200-76301800	Enhancers	Placenta Amnion	Placenta Amnion
38	chr11:76299200-76302000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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