Variant report

Variant	rs61324790
Chromosome Location	chr11:76292694-76292695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10160346	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10219259	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10501423	0.82[EUR][1000 genomes]
rs11236793	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11236794	0.82[EUR][1000 genomes]
rs12273530	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12274380	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12276178	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12280432	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12281497	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12286370	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12286377	0.82[EUR][1000 genomes]
rs28559296	0.87[AMR][1000 genomes]
rs56785389	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57046912	0.82[EUR][1000 genomes]
rs57873830	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58019654	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73495480	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518717	chr11:76288937-76310976	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76291200-76299200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:76291600-76294200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:76291600-76299800	Weak transcription	Lung	lung
4	chr11:76292400-76294600	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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