Variant report

Variant	rs11236925
Chromosome Location	chr11:76470941-76470942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76466515..76473526-chr11:76475390..76481084,8	K562	blood:
2	chr11:76468895..76471545-chr11:76491022..76493551,2	K562	blood:
3	chr11:76470374..76472302-chr11:76493108..76494939,2	MCF-7	breast:
4	chr11:76465635..76468118-chr11:76468545..76471163,2	K562	blood:
5	chr11:76469781..76471788-chr11:76495168..76497196,2	K562	blood:
6	chr11:76470672..76472933-chr11:76570370..76572778,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000254632	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10459050	0.85[ASN][1000 genomes]
rs11236932	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11236933	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11236934	0.82[ASN][1000 genomes]
rs3740771	1.00[AMR][1000 genomes]
rs3740772	0.89[AMR][1000 genomes]
rs3758712	0.89[AMR][1000 genomes]
rs55738350	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56941231	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58039301	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73503652	0.85[ASN][1000 genomes]
rs7925095	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7925436	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7941392	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76457000-76474600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76461000-76473800	Weak transcription	Small Intestine	intestine
3	chr11:76464200-76473600	Weak transcription	Right Ventricle	heart
4	chr11:76464800-76474000	Weak transcription	Left Ventricle	heart
5	chr11:76464800-76474000	Weak transcription	Spleen	Spleen
6	chr11:76464800-76474200	Weak transcription	Fetal Lung	lung
7	chr11:76465200-76473800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:76465400-76474200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:76467800-76478400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:76468000-76474400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:76468200-76474200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:76468800-76474400	Weak transcription	HSMMtube	muscle
13	chr11:76469000-76472600	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:76469200-76473400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:76469600-76471000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:76469600-76471400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:76469600-76473000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:76469800-76471200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:76469800-76471600	Enhancers	K562	blood
20	chr11:76470000-76471200	Weak transcription	Fetal Heart	heart
21	chr11:76470000-76471200	Enhancers	Stomach Mucosa	stomach
22	chr11:76470000-76471400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr11:76470000-76475000	Weak transcription	Fetal Brain Female	brain
24	chr11:76470200-76471200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:76470200-76471400	Weak transcription	Esophagus	oesophagus
26	chr11:76470200-76471600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:76470200-76474800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:76470200-76479000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:76470400-76471000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:76470400-76474400	Weak transcription	Placenta	Placenta
31	chr11:76470400-76475000	Weak transcription	Fetal Brain Male	brain
32	chr11:76470600-76472200	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:76470600-76472200	Enhancers	A549	lung
34	chr11:76470600-76482000	Weak transcription	Psoas Muscle	Psoas
35	chr11:76470800-76472400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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