Variant report

Variant	rs3740771
Chromosome Location	chr11:76507582-76507583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:76506483-76508108	A549	lung:	n/a	n/a
2	POLR2A	chr11:76506550-76507663	A549	lung:	n/a	n/a
3	POLR2A	chr11:76507572-76510760	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr11:76503730-76515774	A549	lung:	n/a	n/a
5	POLR2A	chr11:76506490-76508118	A549	lung:	n/a	n/a
6	POLR2A	chr11:76506498-76508114	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76504410..76507803-chr11:76511412..76514048,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261578	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10459050	0.82[ASN][1000 genomes]
rs10899284	0.97[ASN][1000 genomes]
rs11236925	1.00[AMR][1000 genomes]
rs11236932	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11236933	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11236934	0.85[ASN][1000 genomes]
rs11236938	0.97[ASN][1000 genomes]
rs3740772	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3758712	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55738350	0.89[AMR][1000 genomes]
rs56941231	0.89[AMR][1000 genomes]
rs58039301	1.00[AMR][1000 genomes]
rs61302956	0.97[ASN][1000 genomes]
rs73503652	0.82[ASN][1000 genomes]
rs7925095	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7925436	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7925977	0.80[ASN][1000 genomes]
rs7941392	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76496200-76513800	Weak transcription	Fetal Kidney	kidney
2	chr11:76496600-76509800	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:76496800-76510000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:76499000-76510200	Weak transcription	Thymus	Thymus
5	chr11:76500400-76509800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:76500400-76510000	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:76500800-76510000	Weak transcription	Brain Substantia Nigra	brain
8	chr11:76503400-76509400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:76503400-76510000	Weak transcription	K562	blood
10	chr11:76504200-76507600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:76504200-76510000	Genic enhancers	Esophagus	oesophagus
12	chr11:76504200-76510000	Genic enhancers	Fetal Intestine Small	intestine
13	chr11:76504200-76510200	Weak transcription	HSMMtube	muscle
14	chr11:76504400-76508800	Genic enhancers	Liver	Liver
15	chr11:76504400-76509400	Weak transcription	Small Intestine	intestine
16	chr11:76504600-76509800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:76504600-76510000	Weak transcription	Brain Anterior Caudate	brain
18	chr11:76504600-76510000	Weak transcription	Dnd41	blood
19	chr11:76504600-76510000	Weak transcription	HUVEC	blood vessel
20	chr11:76504600-76510000	Weak transcription	NHDF-Ad	bronchial
21	chr11:76504800-76510000	Weak transcription	HSMM	muscle
22	chr11:76505000-76509600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr11:76505000-76509800	Weak transcription	Fetal Brain Male	brain
24	chr11:76505200-76509800	Strong transcription	Fetal Stomach	stomach
25	chr11:76505200-76510000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:76505200-76510800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:76505400-76509200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:76505400-76509200	Strong transcription	HMEC	breast
29	chr11:76505400-76509400	Weak transcription	Fetal Heart	heart
30	chr11:76505400-76509600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:76505400-76509800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:76505400-76510000	Weak transcription	NH-A	brain
33	chr11:76505400-76510200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:76505600-76508200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:76505600-76509600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:76505600-76509800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:76505600-76509800	Strong transcription	NHEK	skin
38	chr11:76505600-76510000	Weak transcription	Right Atrium	heart
39	chr11:76505800-76509200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:76506000-76509400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:76506000-76509400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:76506000-76509800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:76506000-76509800	Strong transcription	Fetal Brain Female	brain
44	chr11:76506000-76509800	Weak transcription	Right Ventricle	heart
45	chr11:76506200-76508200	Genic enhancers	Fetal Intestine Large	intestine
46	chr11:76506200-76508600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:76506200-76508600	Strong transcription	Spleen	Spleen
48	chr11:76506200-76508800	Genic enhancers	A549	lung
49	chr11:76506200-76509600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:76506200-76509600	Strong transcription	Placenta	Placenta

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