Variant report

Variant	rs61302956
Chromosome Location	chr11:76504022-76504023
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76499655..76502011-chr11:76503724..76505940,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10459050	0.85[ASN][1000 genomes]
rs10899284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899285	1.00[EUR][1000 genomes]
rs10899286	1.00[EUR][1000 genomes]
rs11236927	0.92[EUR][1000 genomes]
rs11236932	0.87[ASN][1000 genomes]
rs11236933	0.87[ASN][1000 genomes]
rs11236934	0.87[ASN][1000 genomes]
rs11236938	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236939	1.00[EUR][1000 genomes]
rs11236940	1.00[EUR][1000 genomes]
rs11236941	1.00[EUR][1000 genomes]
rs11236942	1.00[EUR][1000 genomes]
rs3740771	0.97[ASN][1000 genomes]
rs3740772	1.00[ASN][1000 genomes]
rs3758712	0.90[ASN][1000 genomes]
rs73503652	0.85[ASN][1000 genomes]
rs7925095	0.87[ASN][1000 genomes]
rs7925436	0.87[ASN][1000 genomes]
rs7925977	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897931	chr11:76489673-76540708	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76496000-76506800	Weak transcription	Aorta	Aorta
2	chr11:76496200-76513800	Weak transcription	Fetal Kidney	kidney
3	chr11:76496600-76504400	Weak transcription	HUVEC	blood vessel
4	chr11:76496600-76509800	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:76496800-76504200	Weak transcription	HSMM	muscle
6	chr11:76496800-76507400	Enhancers	Stomach Mucosa	stomach
7	chr11:76496800-76510000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:76498400-76505800	Enhancers	Placenta	Placenta
9	chr11:76499000-76510200	Weak transcription	Thymus	Thymus
10	chr11:76499400-76504200	Enhancers	Esophagus	oesophagus
11	chr11:76499800-76504200	Weak transcription	Fetal Brain Male	brain
12	chr11:76500000-76504600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:76500000-76506400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:76500200-76504200	Enhancers	HepG2	liver
15	chr11:76500400-76504200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:76500400-76504200	Weak transcription	Fetal Lung	lung
17	chr11:76500400-76505600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:76500400-76509800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:76500400-76510000	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:76500600-76504400	Weak transcription	Fetal Heart	heart
21	chr11:76500800-76504200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:76500800-76504400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:76500800-76510000	Weak transcription	Brain Substantia Nigra	brain
24	chr11:76501200-76504400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr11:76501600-76505000	Weak transcription	Right Atrium	heart
26	chr11:76501800-76504200	Weak transcription	Spleen	Spleen
27	chr11:76502200-76505400	Genic enhancers	HMEC	breast
28	chr11:76502400-76505400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:76502600-76504200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:76502600-76505400	Enhancers	Osteobl	bone
31	chr11:76502800-76504200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr11:76502800-76504800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:76503000-76506200	Enhancers	Fetal Intestine Large	intestine
34	chr11:76503200-76504200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:76503200-76504200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:76503200-76504200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:76503200-76504200	Weak transcription	NH-A	brain
38	chr11:76503200-76506600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:76503400-76505200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:76503400-76509400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:76503400-76510000	Weak transcription	K562	blood
42	chr11:76503600-76504200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
43	chr11:76503600-76504600	Enhancers	NHDF-Ad	bronchial
44	chr11:76503600-76505400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:76503600-76506600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr11:76503800-76504200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:76503800-76504200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:76503800-76504200	Weak transcription	Small Intestine	intestine
49	chr11:76503800-76504800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:76503800-76505000	Enhancers	Rectal Mucosa Donor 29	rectum

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