Variant report

Variant	rs7925436
Chromosome Location	chr11:76488912-76488913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10459050	0.97[ASN][1000 genomes]
rs10899284	0.87[ASN][1000 genomes]
rs11236925	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11236932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11236933	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11236934	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11236938	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1149618	1.00[YRI][hapmap]
rs3740771	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3740772	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3758712	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55738350	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56941231	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58039301	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs61302956	0.87[ASN][1000 genomes]
rs73503652	0.97[ASN][1000 genomes]
rs7925095	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7925977	0.95[ASN][1000 genomes]
rs7941392	0.89[AMR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76482800-76492400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:76485600-76489800	Weak transcription	Esophagus	oesophagus
3	chr11:76485600-76492200	Weak transcription	Ovary	ovary
4	chr11:76486000-76492200	Weak transcription	Liver	Liver
5	chr11:76486400-76491600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:76487200-76491400	ZNF genes & repeats	A549	lung
7	chr11:76487800-76492200	Weak transcription	NHEK	skin
8	chr11:76488000-76492200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:76488200-76489000	Enhancers	HepG2	liver
10	chr11:76488400-76489000	Bivalent Enhancer	HUVEC	blood vessel
11	chr11:76488400-76489600	Enhancers	Fetal Lung	lung
12	chr11:76488400-76492000	Enhancers	Adipose Nuclei	Adipose
13	chr11:76488400-76493400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:76488600-76492200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:76488800-76492000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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