Variant report
| Variant | rs11238566 |
|---|---|
| Chromosome Location | chr10:43993129-43993130 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10409 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10899800 | 0.91[EUR][1000 genomes] |
| rs10899801 | 0.91[EUR][1000 genomes] |
| rs10899802 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10899803 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10899806 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10899807 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10899808 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11238532 | 0.83[EUR][1000 genomes] |
| rs11238536 | 0.83[EUR][1000 genomes] |
| rs11238553 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11238558 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11238572 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11525297 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11815101 | 1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12220230 | 0.83[EUR][1000 genomes] |
| rs12220528 | 0.87[EUR][1000 genomes] |
| rs12245541 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12254798 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12261855 | 0.87[EUR][1000 genomes] |
| rs12262836 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13376803 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13376924 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs28865415 | 0.91[EUR][1000 genomes] |
| rs7099802 | 0.83[EUR][1000 genomes] |
| rs7907179 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895088 | chr10:43871999-44003101 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046236 | chr10:43968075-44012933 | ZNF genes & repeats Weak transcription Strong transcription Enhancers | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1051325 | chr10:43988273-44022473 | ZNF genes & repeats Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:43987400-44003200 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
