Variant report

Variant	rs11815101
Chromosome Location	chr10:43976350-43976351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43930707..43932404-chr10:43975241..43977746,2	K562	blood:

Variant related genes	Relation type
ENSG00000243660	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10409	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10899796	0.80[AMR][1000 genomes]
rs10899800	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899801	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899802	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899803	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899806	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899807	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899808	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11238530	0.96[AMR][1000 genomes]
rs11238532	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11238536	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11238553	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238558	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238566	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238572	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11525297	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12220230	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12220528	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12245541	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12250140	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12254798	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12261855	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12262836	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13376803	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13376924	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28865415	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57059251	0.82[ASN][1000 genomes]
rs7099802	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7907179	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1043746	chr10:43940898-43977155	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43952000-43977200	Weak transcription	HSMMtube	muscle
2	chr10:43957800-43976600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr10:43957800-43977200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr10:43962800-43976400	Weak transcription	Primary T cells from cord blood	blood
5	chr10:43966600-43976400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:43967000-43976400	Weak transcription	Aorta	Aorta
7	chr10:43967400-43978600	Weak transcription	Pancreas	Pancrea
8	chr10:43968000-43976400	Weak transcription	Ovary	ovary
9	chr10:43968800-43977200	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:43969000-43977000	Weak transcription	Brain Anterior Caudate	brain
11	chr10:43969400-43977200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:43969600-43977200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:43969800-43978200	Weak transcription	Fetal Kidney	kidney
14	chr10:43971200-43976400	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:43972200-43976400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:43972200-43976400	Weak transcription	Adipose Nuclei	Adipose
17	chr10:43972200-43976800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:43974800-43977200	Weak transcription	Gastric	stomach
19	chr10:43974800-43982600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:43975000-43977200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:43975200-43977200	Weak transcription	Primary B cells from cord blood	blood
22	chr10:43975400-43976400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:43975400-43977000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:43975600-43976400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:43976000-43977200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:43976000-43979200	ZNF genes & repeats	Liver	Liver
27	chr10:43976200-43977200	Weak transcription	Brain Angular Gyrus	brain
28	chr10:43976200-43978600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:43976200-43978600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:43976200-43978600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr10:43976200-43978800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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