Variant report

Variant	rs12262836
Chromosome Location	chr10:44002408-44002409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs10899794	0.84[JPT][hapmap]
rs10899797	0.83[CHD][hapmap];0.84[JPT][hapmap]
rs10899800	0.81[AMR][1000 genomes]
rs10899801	0.84[AMR][1000 genomes]
rs10899802	0.88[AMR][1000 genomes]
rs10899803	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes]
rs10899806	0.92[AMR][1000 genomes]
rs10899807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes]
rs10899808	0.92[AMR][1000 genomes]
rs1112959	0.80[JPT][hapmap]
rs11238530	0.84[AMR][1000 genomes]
rs11238532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs11238536	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs11238553	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs11238558	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11238566	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11238572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11525297	0.88[AMR][1000 genomes]
rs11814409	0.85[CHB][hapmap]
rs11815101	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12220230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs12220528	0.81[AMR][1000 genomes]
rs12240317	0.80[JPT][hapmap]
rs12245391	0.83[JPT][hapmap]
rs12245541	0.84[AMR][1000 genomes]
rs12250140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs12254798	0.88[AMR][1000 genomes]
rs12260474	0.80[JPT][hapmap]
rs12261855	0.81[AMR][1000 genomes]
rs13376803	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes]
rs13376924	0.92[AMR][1000 genomes]
rs17153701	0.84[ASW][hapmap]
rs2247979	0.83[CHD][hapmap];0.84[JPT][hapmap]
rs2247981	0.83[CHD][hapmap];0.84[JPT][hapmap]
rs2250444	0.83[CHD][hapmap];0.84[JPT][hapmap]
rs2261636	0.84[JPT][hapmap]
rs28865415	0.81[AMR][1000 genomes]
rs4948726	0.84[JPT][hapmap]
rs7099802	0.81[AMR][1000 genomes]
rs7905676	0.84[JPT][hapmap]
rs7907179	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1051325	chr10:43988273-44022473	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1797129	chr10:43996713-44002994	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv275081	chr10:43996713-44018932	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1816330	chr10:43999354-44002994	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43987400-44003200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:43998000-44005000	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:44000400-44002800	Weak transcription	Ovary	ovary
4	chr10:44002200-44003000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr10:44002400-44002800	ZNF genes & repeats	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links