Variant report

Variant	rs11239060
Chromosome Location	chr10:44966955-44966956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11239056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11816986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244310	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12248343	1.00[AMR][1000 genomes]
rs12249278	1.00[AMR][1000 genomes]
rs12265295	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58042767	1.00[AMR][1000 genomes]
rs7069212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7076808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2756014	chr10:44966294-44972694	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44955800-44968400	Weak transcription	Psoas Muscle	Psoas
2	chr10:44955800-44971800	Weak transcription	Right Atrium	heart
3	chr10:44956600-44970400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44965200-44967400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr10:44965400-44967200	Enhancers	Fetal Muscle Leg	muscle
6	chr10:44965400-44967200	Enhancers	Osteobl	bone
7	chr10:44965600-44967200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:44965800-44967200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:44966000-44967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:44966600-44969000	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:44966600-44971800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:44966800-44967200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links