Variant report

Variant	rs11816986
Chromosome Location	chr10:44975853-44975854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11239056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239058	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239059	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239060	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239067	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244310	0.83[AMR][1000 genomes]
rs12248343	1.00[AMR][1000 genomes]
rs12249278	1.00[AMR][1000 genomes]
rs12265295	1.00[AMR][1000 genomes]
rs12266487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58042767	1.00[AMR][1000 genomes]
rs7069212	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7076808	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv947901	chr10:44974108-45000726	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44972000-44976000	Enhancers	Ovary	ovary
2	chr10:44973200-44976200	Enhancers	Adipose Nuclei	Adipose
3	chr10:44973600-44976000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:44975800-44976000	Enhancers	Fetal Muscle Trunk	muscle
5	chr10:44975800-44976200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44975800-44976200	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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