Variant report

Variant	rs7076808
Chromosome Location	chr10:44965380-44965381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11239056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11816986	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244310	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12248343	1.00[AMR][1000 genomes]
rs12249278	1.00[AMR][1000 genomes]
rs12265295	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58042767	1.00[AMR][1000 genomes]
rs7069212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44955800-44968400	Weak transcription	Psoas Muscle	Psoas
2	chr10:44955800-44971800	Weak transcription	Right Atrium	heart
3	chr10:44956600-44970400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44960000-44966200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:44962200-44965400	Weak transcription	Osteobl	bone
6	chr10:44962200-44965600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:44963400-44965400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr10:44965200-44966000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:44965200-44966200	Enhancers	Fetal Muscle Trunk	muscle
10	chr10:44965200-44967400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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