Variant report

Variant	rs7069212
Chromosome Location	chr10:44965943-44965944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11239056	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239058	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239059	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239060	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239066	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11239067	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11816986	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244310	0.83[AMR][1000 genomes]
rs12248343	1.00[AMR][1000 genomes]
rs12249278	1.00[AMR][1000 genomes]
rs12265295	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58042767	1.00[AMR][1000 genomes]
rs7076808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895101	chr10:44909081-45007131	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44955800-44968400	Weak transcription	Psoas Muscle	Psoas
2	chr10:44955800-44971800	Weak transcription	Right Atrium	heart
3	chr10:44956600-44970400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:44960000-44966200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:44965200-44966000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:44965200-44966200	Enhancers	Fetal Muscle Trunk	muscle
7	chr10:44965200-44967400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:44965400-44967200	Enhancers	Fetal Muscle Leg	muscle
9	chr10:44965400-44967200	Enhancers	Osteobl	bone
10	chr10:44965600-44967200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44965800-44966600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:44965800-44967200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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