Variant report

Variant	rs11241391
Chromosome Location	chr5:115770409-115770410
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115770336..115772692-chr5:115776003..115777932,3	MCF-7	breast:
2	chr5:115762949..115765718-chr5:115769908..115771638,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1046683	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11241393	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs153617	0.80[EUR][1000 genomes]
rs154608	0.80[EUR][1000 genomes]
rs154609	0.80[EUR][1000 genomes]
rs154610	0.80[EUR][1000 genomes]
rs154611	0.80[EUR][1000 genomes]
rs60781304	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6866291	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73781089	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
4	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:115751600-115774800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
8	chr5:115757000-115774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:115757200-115782000	Weak transcription	Gastric	stomach
10	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
11	chr5:115759000-115773600	Weak transcription	Fetal Kidney	kidney
12	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr5:115761600-115773400	Weak transcription	Liver	Liver
15	chr5:115761600-115773400	Weak transcription	HepG2	liver
16	chr5:115762600-115771800	Weak transcription	Left Ventricle	heart
17	chr5:115765800-115771800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr5:115766000-115772400	Weak transcription	Brain Substantia Nigra	brain
19	chr5:115768000-115774600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr5:115768400-115772000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr5:115768400-115772200	Weak transcription	Brain Hippocampus Middle	brain
22	chr5:115768400-115774600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:115768400-115777000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:115768400-115777800	Weak transcription	Ovary	ovary
25	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
26	chr5:115768600-115772200	Weak transcription	Brain Anterior Caudate	brain
27	chr5:115768800-115772200	Weak transcription	Brain Angular Gyrus	brain
28	chr5:115768800-115780600	Weak transcription	Primary B cells from cord blood	blood
29	chr5:115769400-115771000	Weak transcription	Primary T cells from cord blood	blood
30	chr5:115769800-115777800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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