Variant report

Variant	rs6866291
Chromosome Location	chr5:115779814-115779815
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:115779441-115779827	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr5:115779444-115779814	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr5:115778729-115779892	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000248445	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1046683	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11241391	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11241393	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56153002	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60781304	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73781089	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
3	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:115757200-115782000	Weak transcription	Gastric	stomach
5	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
7	chr5:115768800-115780600	Weak transcription	Primary B cells from cord blood	blood
8	chr5:115772000-115781200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr5:115772000-115781800	Weak transcription	Spleen	Spleen
10	chr5:115772200-115781400	Enhancers	Brain Hippocampus Middle	brain
11	chr5:115772400-115781400	Enhancers	Brain Substantia Nigra	brain
12	chr5:115772600-115781200	Enhancers	Brain Cingulate Gyrus	brain
13	chr5:115773200-115780600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:115773200-115781000	Weak transcription	Primary T cells from cord blood	blood
15	chr5:115773200-115781200	Enhancers	Brain Anterior Caudate	brain
16	chr5:115773600-115781600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:115774000-115780400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr5:115774600-115780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:115774600-115780200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
21	chr5:115775200-115781800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr5:115775800-115781400	Enhancers	Fetal Brain Female	brain
23	chr5:115776600-115784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:115776600-115786600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:115776800-115780600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:115777200-115782000	Weak transcription	HepG2	liver
27	chr5:115777400-115780600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr5:115777400-115781000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:115777400-115782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:115778000-115780400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:115778000-115782600	Weak transcription	Fetal Thymus	thymus
32	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr5:115778200-115780200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr5:115778200-115780400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr5:115778200-115780400	Weak transcription	Ovary	ovary
36	chr5:115778200-115780600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr5:115778200-115780600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr5:115778200-115781800	Weak transcription	Lung	lung
39	chr5:115778200-115781800	Weak transcription	Psoas Muscle	Psoas
40	chr5:115778200-115782000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr5:115778200-115782000	Weak transcription	Esophagus	oesophagus
42	chr5:115778200-115783000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr5:115778200-115785800	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr5:115778200-115787600	Weak transcription	HMEC	breast
45	chr5:115778200-115787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr5:115778400-115780000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:115778400-115780200	Weak transcription	Brain Germinal Matrix	brain
48	chr5:115778400-115780200	Weak transcription	Fetal Stomach	stomach
49	chr5:115778400-115780400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr5:115778400-115780400	Weak transcription	Pancreas	Pancrea

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