Variant report

Variant	rs56153002
Chromosome Location	chr5:115784061-115784062
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr5:115784055-115785416	HepG2	liver:	n/a	n/a
2	POLR2A	chr5:115783979-115784142	H1-hESC	embryonic stem cell:	n/a	n/a
3	FOXA1	chr5:115784051-115784571	HepG2	liver:	n/a	n/a
4	FOXA1	chr5:115784045-115784649	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000256121	TF binding region
ENSG00000248445	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1046683	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241393	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139905	0.87[ASN][1000 genomes]
rs60781304	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866291	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73781089	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
3	chr5:115776600-115786600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:115778000-115790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:115778200-115785800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr5:115778200-115787600	Weak transcription	HMEC	breast
7	chr5:115778200-115787800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:115778400-115788800	Weak transcription	HSMMtube	muscle
9	chr5:115779000-115788600	Weak transcription	Fetal Heart	heart
10	chr5:115779000-115789800	Strong transcription	Placenta	Placenta
11	chr5:115779200-115788400	Weak transcription	Right Atrium	heart
12	chr5:115779400-115784400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:115779400-115784400	Strong transcription	Fetal Intestine Small	intestine
14	chr5:115780200-115784800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:115780200-115785000	Strong transcription	Duodenum Mucosa	Duodenum
16	chr5:115780200-115787400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:115780400-115784400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:115780400-115785800	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr5:115780600-115784200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:115780600-115785000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr5:115780600-115789400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:115780800-115784400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr5:115780800-115784400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr5:115781000-115784400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr5:115781200-115784400	Strong transcription	H9 Cell Line	embryonic stem cell
26	chr5:115781200-115784400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr5:115781200-115785000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr5:115781200-115785600	Strong transcription	Fetal Muscle Leg	muscle
29	chr5:115781400-115789600	Weak transcription	Primary B cells from cord blood	blood
30	chr5:115781600-115785000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr5:115781800-115784200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr5:115781800-115784200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:115781800-115785200	Strong transcription	Primary T cells from cord blood	blood
34	chr5:115782000-115784200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr5:115782000-115789600	Weak transcription	Fetal Brain Male	brain
36	chr5:115782200-115784600	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr5:115782200-115785400	Strong transcription	Left Ventricle	heart
38	chr5:115782200-115798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr5:115782400-115786600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr5:115782600-115787200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr5:115782600-115788600	Weak transcription	Psoas Muscle	Psoas
42	chr5:115782600-115789800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr5:115782800-115789200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr5:115783000-115789800	Weak transcription	Fetal Thymus	thymus
45	chr5:115783200-115784800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr5:115783200-115788200	Weak transcription	Brain Angular Gyrus	brain
47	chr5:115783400-115784200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:115783400-115787200	Strong transcription	Fetal Intestine Large	intestine
49	chr5:115783400-115788600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr5:115783400-115789800	Weak transcription	Thymus	Thymus

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