Variant report

Variant	rs11241393
Chromosome Location	chr5:115796464-115796465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115794809..115796777-chr5:115799899..115802150,2	MCF-7	breast:
2	chr5:115796425..115798822-chr5:115817832..115819874,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1046683	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11241391	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17139905	0.87[ASN][1000 genomes]
rs56153002	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60781304	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866291	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73781089	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781097	0.82[AMR][1000 genomes]

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115782200-115798200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
4	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
5	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
6	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
7	chr5:115783600-115813200	Weak transcription	Gastric	stomach
8	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:115783800-115803200	Weak transcription	Liver	Liver
10	chr5:115784200-115796800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:115784200-115800000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:115785200-115800200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:115788000-115813200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:115789000-115797400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:115789000-115800200	Weak transcription	Psoas Muscle	Psoas
16	chr5:115789600-115812600	Strong transcription	Fetal Intestine Large	intestine
17	chr5:115789800-115803200	Weak transcription	Lung	lung
18	chr5:115790000-115796800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:115790000-115800200	Weak transcription	Fetal Intestine Small	intestine
20	chr5:115790400-115803200	Weak transcription	Aorta	Aorta
21	chr5:115790400-115812400	Weak transcription	HepG2	liver
22	chr5:115790600-115800000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr5:115790800-115798600	Weak transcription	Brain Angular Gyrus	brain
24	chr5:115790800-115800000	Weak transcription	Adipose Nuclei	Adipose
25	chr5:115790800-115800200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr5:115790800-115802800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:115791000-115797800	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr5:115791000-115800000	Weak transcription	Primary B cells from cord blood	blood
29	chr5:115791000-115800200	Weak transcription	Fetal Brain Female	brain
30	chr5:115791000-115800200	Weak transcription	Left Ventricle	heart
31	chr5:115791000-115801600	Weak transcription	Fetal Thymus	thymus
32	chr5:115791000-115802200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:115791000-115802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:115791000-115802800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr5:115791000-115804000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr5:115791000-115812400	Weak transcription	Fetal Brain Male	brain
37	chr5:115791000-115812600	Weak transcription	Ovary	ovary
38	chr5:115791200-115797800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:115791400-115799400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr5:115791400-115802200	Weak transcription	Primary T cells from cord blood	blood
41	chr5:115791400-115805400	Weak transcription	HSMMtube	muscle
42	chr5:115791600-115797200	Weak transcription	Brain Hippocampus Middle	brain
43	chr5:115791600-115809600	Weak transcription	Right Atrium	heart
44	chr5:115791600-115838000	Weak transcription	Right Ventricle	heart
45	chr5:115791800-115800200	Weak transcription	Fetal Stomach	stomach
46	chr5:115792000-115805200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr5:115792000-115809200	Weak transcription	Colon Smooth Muscle	Colon
48	chr5:115792400-115799200	Weak transcription	Brain Substantia Nigra	brain
49	chr5:115792400-115800000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr5:115792600-115799400	Weak transcription	Rectal Mucosa Donor 29	rectum

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