Variant report

Variant	rs1046683
Chromosome Location	chr5:115805029-115805030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11241391	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11241393	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139905	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs56153002	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60781304	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866291	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73781089	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73781097	0.82[AMR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
3	chr5:115783600-115813200	Weak transcription	Gastric	stomach
4	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:115788000-115813200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:115789600-115812600	Strong transcription	Fetal Intestine Large	intestine
7	chr5:115790400-115812400	Weak transcription	HepG2	liver
8	chr5:115791000-115812400	Weak transcription	Fetal Brain Male	brain
9	chr5:115791000-115812600	Weak transcription	Ovary	ovary
10	chr5:115791400-115805400	Weak transcription	HSMMtube	muscle
11	chr5:115791600-115809600	Weak transcription	Right Atrium	heart
12	chr5:115791600-115838000	Weak transcription	Right Ventricle	heart
13	chr5:115792000-115805200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr5:115792000-115809200	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:115792800-115812600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:115796000-115833400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr5:115797000-115834800	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr5:115797000-115838400	Strong transcription	Placenta	Placenta
19	chr5:115797400-115833800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:115797600-115834600	Strong transcription	H9 Cell Line	embryonic stem cell
21	chr5:115797800-115834800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:115798000-115833200	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr5:115798000-115834600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:115799000-115830400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr5:115799400-115812200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr5:115799400-115832000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr5:115800200-115812800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
28	chr5:115800400-115805800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr5:115800600-115812000	Weak transcription	Fetal Heart	heart
30	chr5:115800800-115809000	Weak transcription	Primary B cells from cord blood	blood
31	chr5:115800800-115813200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr5:115801000-115812600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:115801200-115808600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr5:115801400-115824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr5:115801400-115825000	Weak transcription	Psoas Muscle	Psoas
36	chr5:115802000-115805600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr5:115802200-115809400	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:115802400-115809200	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr5:115802600-115805800	Strong transcription	Fetal Brain Female	brain
40	chr5:115803000-115805200	Strong transcription	Fetal Kidney	kidney
41	chr5:115803000-115815400	Weak transcription	Thymus	Thymus
42	chr5:115803400-115812400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr5:115803400-115812600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:115803400-115813200	Weak transcription	Fetal Thymus	thymus
45	chr5:115803400-115816000	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr5:115803400-115833200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
47	chr5:115803600-115805400	Weak transcription	Brain Hippocampus Middle	brain
48	chr5:115803600-115810800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr5:115803600-115811000	Weak transcription	Brain Substantia Nigra	brain
50	chr5:115803600-115813000	Weak transcription	Esophagus	oesophagus

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