The 2.0 version of rSNPBase

Variant report

Variant rs11249718
Chromosome Location chr5:179958532-179958533
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:179929000-179959200 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr5:179933800-179959000 Weak transcription Placenta Amnion Placenta Amnion
3 chr5:179942000-179958800 Weak transcription Esophagus oesophagus
4 chr5:179942600-179959000 Weak transcription HepG2 liver
5 chr5:179946200-179960800 Weak transcription NHLF lung
6 chr5:179946800-179959000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
7 chr5:179949800-179958800 Weak transcription Aorta Aorta
8 chr5:179950200-179958600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
9 chr5:179950200-179959000 Weak transcription Brain Cingulate Gyrus brain
10 chr5:179950200-179959200 Weak transcription Brain Anterior Caudate brain
11 chr5:179950200-179959200 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr5:179950200-179959800 Weak transcription Left Ventricle heart
13 chr5:179950200-179975200 Weak transcription Psoas Muscle Psoas
14 chr5:179950200-179984400 Weak transcription NHDF-Ad bronchial
15 chr5:179950200-179992000 Weak transcription Right Ventricle heart
16 chr5:179950400-179992400 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr5:179950600-179959400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr5:179950600-180004000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr5:179950800-179959000 Weak transcription Brain Inferior Temporal Lobe brain
20 chr5:179951000-179959200 Weak transcription Fetal Brain Male brain
21 chr5:179951000-179959400 Weak transcription NHEK skin
22 chr5:179951000-179991800 Weak transcription Small Intestine intestine
23 chr5:179951200-179959200 Weak transcription Stomach Smooth Muscle stomach
24 chr5:179951400-179959200 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr5:179951600-179959000 Weak transcription Colon Smooth Muscle Colon
26 chr5:179951600-179967000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
27 chr5:179952400-179969000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
28 chr5:179952800-179958800 Weak transcription Thymus Thymus
29 chr5:179952800-179959200 Weak transcription Muscle Satellite Cultured Cells --
30 chr5:179952800-179967200 Weak transcription Primary T killer naive cells fromperipheralblood blood
31 chr5:179952800-179975400 Weak transcription Stomach Mucosa stomach
32 chr5:179953000-179959600 Weak transcription Placenta Placenta
33 chr5:179953200-179958600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
34 chr5:179953200-179959200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr5:179953400-179975200 Strong transcription Primary hematopoietic stem cells short term culture blood
36 chr5:179953600-179959200 Weak transcription Primary T killer memory cells from peripheral blood blood
37 chr5:179953600-179959200 Weak transcription Brain Angular Gyrus brain
38 chr5:179953600-179977000 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr5:179953800-179975400 Weak transcription Fetal Heart heart
40 chr5:179954000-179962600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr5:179954000-179964400 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
42 chr5:179954400-179959000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr5:179954600-179964200 Strong transcription Cortex derived primary cultured neurospheres brain
44 chr5:179955000-179958600 Weak transcription Gastric stomach
45 chr5:179955000-179958800 Weak transcription Ovary ovary
46 chr5:179955000-179959200 Weak transcription Pancreas Pancrea
47 chr5:179955600-179962800 Strong transcription Primary monocytes fromperipheralblood blood
48 chr5:179955600-179977600 Weak transcription Colonic Mucosa Colon
49 chr5:179956200-179960000 Strong transcription iPS-15b Cell Line embryonic stem cell
50 chr5:179956200-179962800 Strong transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015