The 2.0 version of rSNPBase

Variant report

Variant rs13174261
Chromosome Location chr5:179959708-179959709
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:179946200-179960800 Weak transcription NHLF lung
2 chr5:179950200-179959800 Weak transcription Left Ventricle heart
3 chr5:179950200-179975200 Weak transcription Psoas Muscle Psoas
4 chr5:179950200-179984400 Weak transcription NHDF-Ad bronchial
5 chr5:179950200-179992000 Weak transcription Right Ventricle heart
6 chr5:179950400-179992400 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr5:179950600-180004000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr5:179951000-179991800 Weak transcription Small Intestine intestine
9 chr5:179951600-179967000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr5:179952400-179969000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr5:179952800-179967200 Weak transcription Primary T killer naive cells fromperipheralblood blood
12 chr5:179952800-179975400 Weak transcription Stomach Mucosa stomach
13 chr5:179953400-179975200 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr5:179953600-179977000 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr5:179953800-179975400 Weak transcription Fetal Heart heart
16 chr5:179954000-179962600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:179954000-179964400 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
18 chr5:179954600-179964200 Strong transcription Cortex derived primary cultured neurospheres brain
19 chr5:179955600-179962800 Strong transcription Primary monocytes fromperipheralblood blood
20 chr5:179955600-179977600 Weak transcription Colonic Mucosa Colon
21 chr5:179956200-179960000 Strong transcription iPS-15b Cell Line embryonic stem cell
22 chr5:179956200-179962800 Strong transcription Sigmoid Colon Sigmoid Colon
23 chr5:179956200-179963800 Strong transcription Primary T helper naive cells fromperipheralblood blood
24 chr5:179956200-179964400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr5:179956200-179964800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr5:179956400-179962800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr5:179956600-179961800 Strong transcription Primary neutrophils fromperipheralblood blood
28 chr5:179956600-179962400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
29 chr5:179956600-179964400 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr5:179956600-179964400 Strong transcription Fetal Muscle Leg muscle
31 chr5:179956800-179961800 Strong transcription Primary T helper cells PMA-I stimulated --
32 chr5:179956800-179964600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr5:179957000-179960800 Weak transcription Rectal Smooth Muscle rectum
34 chr5:179957000-179962200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr5:179957000-179962400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr5:179957200-179960600 Weak transcription K562 blood
37 chr5:179957200-179961600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr5:179957400-179959800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
39 chr5:179957400-179959800 Weak transcription Hela-S3 cervix
40 chr5:179957400-179964200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
41 chr5:179957400-179976800 Weak transcription Osteobl bone
42 chr5:179957600-179964200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
43 chr5:179957600-179965800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr5:179957600-179967200 Weak transcription A549 lung
45 chr5:179957600-179967200 Weak transcription NH-A brain
46 chr5:179958200-179959800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr5:179958200-179960200 Strong transcription Spleen Spleen
48 chr5:179958200-179962200 Strong transcription Fetal Stomach stomach
49 chr5:179958200-179971000 Weak transcription HUVEC blood vessel
50 chr5:179958400-179961400 Strong transcription Lung lung

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Last update: Aug 31, 2015